datcnv     /cc:\data\ctd\%2%3.XMLCON /ic:\data\ctd\%2%3.hex  /oc:\data\ctd\%4   /pc:\data\ctd\%4\DatCnv.psa
  
AlignCTD   /ic:\data\ctd\%4\%2%3.cnv   /oc:\data\ctd\%4   /pc:\data\ctd\%4\alignCTD.psa

CellTM     /ic:\data\ctd\%4\%2%3.cnv   /oc:\data\ctd\%4   /pc:\data\ctd\%4\CellTM.psa

Derive     /cc:\data\ctd\%2%3.XMLCON /ic:\data\ctd\%4\%2%3.cnv /oc:\data\ctd\%4   /pc:\data\ctd\%4\Derive.psa

@print before binning
@seaplot   /ic:\data\ctd\%4\%2%3.cnv   /oc:\data\ctd\%4 /pc:\data\ctd\%4\seaplot_left.psa
@seaplot   /ic:\data\ctd\%4\%2%3.cnv   /oc:\data\ctd\%4 /pc:\data\ctd\%4\seaplot_left_print.psa
@seaplot   /ic:\data\ctd\%4\%2%3.cnv   /oc:\data\ctd\%4 /pc:\data\ctd\%4\seaplot_right.psa
@seaplot   /ic:\data\ctd\%4\%2%3.cnv   /oc:\data\ctd\%4 /pc:\data\ctd\%4\seaplot_right_print.psa

binavg     /ic:\data\ctd\%4\%2%3.cnv   /oc:\data\ctd\%4   /pc:\data\ctd\%4\BinAvg.psa

trans      /ic:\data\ctd\%4\%2%3.cnv   /oc:\data\ctd\%4   /pc:\data\ctd\%4\Trans.psa

split      /ic:\data\ctd\%4\%2%3.cnv   /oc:\data\ctd\%4   /pc:\data\ctd\%4\Split.psa
             
asciiout   /ic:\data\ctd\%4\%2%3.cnv   /oc:\data\ctd\%4   /pc:\data\ctd\%4\ASCII_Out.psa
             
@comment out if no split
asciiout   /ic:\data\ctd\%4\u%2%3.cnv  /oc:\data\ctd\%4   /pc:\data\ctd\%4\ASCII_Out.psa
asciiout   /ic:\data\ctd\%4\d%2%3.cnv  /oc:\data\ctd\%4   /pc:\data\ctd\%4\ASCII_Out.psa

@Comment out if no rosette 
Bottlesum   /cc:\data\ctd\%2%3.XMLCON  /ic:\data\ctd\%4\%2%3.ros   /oc:\data\ctd\%4   /pc:\data\ctd\%4\BottleSum.psa